Alignment of alleles: Common carp (Cyprinus carpio) IGIV2S5

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 V   I   V   V   T   Q   N   P   P   V   L   T   L   S   T   G   Q   T   A   T
  AB103561,IGIV2S5*01           GTA ATT GTG GTG ACC CAG AAT CCT CCA GTC CTC ACG CTG AGT ACA GGA CAG ACG GCC ACA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   D   C   N   L   D   T   V   T   N   S   A                           A   R
  AB103561,IGIV2S5*01           CTG GAC TGT AAT CTG GAC ACC GTC ACT AAT AGT GCT ... ... ... ... ... ... GCT CGA

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   K   Q   I   H   G   G   V   P   Q   F   V   L   Y   F   Y   H   P   N 
  AB103561,IGIV2S5*01           TGG TAT AAA CAG ATT CAT GGA GGA GTT CCA CAG TTT GTC TTA TAT TTC TAC CAT CCA AAC

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 S   S   P   T       Y   G   S   G   Y   S   S       P   K   F   N   S   N   H
  AB103561,IGIV2S5*01           AGT TCT CCT ACG ... TAC GGA TCC GGC TAC TCC TCT ... CCT AAA TTC AAC TCA AAT CAC

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                     K   T   K   S   D   Y   S   L   I   I   S   S   V   D   V   D   D   S   A
  AB103561,IGIV2S5*01           ... AAA ACT AAA TCA GAT TAC AGT CTG ATC ATC AGT AGT GTG GAT GTG GAT GAT TCT GCA

                                                _____________CDR3-IMGT__________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114
                                 V   Y   Y   C   Y   T   W   D   S   S   A   K   E   Y
  AB103561,IGIV2S5*01           GTG TAT TAC TGT TAC ACA TGG GAC AGC TCT GCT AAA GAG TAC #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 08/10/2003
Author: Nathalie Bosc